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Computational Biology Platform

Single-Cell Resolution.
Publication-Ready Results.

Expert bioinformatics dry-lab services for scRNA-seq analysis, spatial transcriptomics, and structure-based molecular docking simulations. We turn biological complexity into interpretable intelligence.

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Open Science Compatible
Reproducible Pipelines
MIAME Standards
SPECIALIZATIONS

Analytical Workflows We Support

High-fidelity pipelines designed by experts to address core biological discovery needs.

OMICS-OS v1.0.8 • CLUSTER-NODE: ACTIVE • JOBS: 3
CD3E T-cell CD14 Myeloid

scRNA-seq Pipeline Active

End-to-end counts deconvolution, cell annotations against Reference Atlases, and Louvain/Leiden graph partitionings.

Cells captured: 10,250+
Genome index: GRCh38 v44
Normalise: SCTransform
Batch effect: Harmony
Affinity: -9.8 kcal/mol

Virtual screening & Binding scores

Structure-based conformation sweeps, energy rating calculations, active site pocket coordinate mapping, and pose complex exports.

Pocket search: fpocket v4
Docking engine: Vina GPU
Affinity sweep: 10k SMILES
Energy rating: MM-GBSA

Spatial spot registrations

10x Visium matrix mapping, spatial gene expression boundaries, correlation maps, and histopathological layer registrations.

Spatial Spots: 4,960 spots
Resolving grid: 55um resolution
DGE stats: DESeq2 pseudo
$ run_pipeline --id cell_cluster_analysis_v2 --mode scRNA-seq
[INFO] Loading GRCh38 genomic indices...
[SUCCESS] Harmony batch effect integration complete.
$ run_pipeline --id cell_cluster_analysis_v2 --mode scRNA-seq _
HOW WE WORK

From Data to Decisions: Your Workflow

A reproducible, secure process that transforms raw count matrices and compound indices into publication-ready discoveries.

01 / BRIEFING

Discovery Briefing

Establish analytical objectives, target biological markers, genome indexes, and cohort categories on an introductory call.

02 / INGESTION

Secure Ingestion

Submit raw sequencing reads (FASTQ), count matrices, or PDB chemical coordinates using secure, NDA-backed file portals.

03 / PROCESSING

Core Processing

Execute strict quality controls, remove doublet cells, filter background noise, or configure active docking grid boxes.

04 / DELIVERY

Genomics Deliver

Deliver annotated cell-types, Seurat/Scanpy coordinates, trajectory paths, and pathway enrichment data matrices.

Docking Pose delivery

Deliver complex structures (PDB/SDF), binding energy ratings, 2D interaction maps, and PyMOL presets.

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Datasets Analyzed
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Pipelines Built
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Cells Annotated
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Satisfied Clients
Computational Stack

Tools Welded Into Our Pipelines

Seurat v5.0 Scanpy Harmony Integration Monocle3 AutoDock Vina GROMACS DESeq2 CellChat PyMOL RDKit
Visual Outputs

Analytical Figure Proofs

High-DPI, vector-graphic outputs prepared exactly to scientific journal publication guidelines.

scRNA-seq

Cell Cluster Annotation UMAP

Clear dimension-reduced clusters representing specific annotated cell subtypes.

Transcriptomics

Differential Gene Expressions

Volcano plots showing statistical logs of fold-change expression boundaries.

Docking

Receptor Ligand Interaction

Interactive binding-pocket poses mapped out in molecular dynamics simulations.

Collaborations

Scientist Endorsements

Hear from wet-lab researchers who transformed raw cells into publication success.

"The bioinformatics support from Omics Lab was instrumental for our recent cell-atlas paper. They did all the Seurat QC, batch integration across three patient batches, and trajectory analysis. They delivered fully commented R notebooks and vectorized figures that went straight into our manuscript."

Dr. Sarah Jenkins

Principal Investigator, Oncology Research

"We handed over a FASTQ library of a multi-organ organism with no established reference index. The team constructed custom alignment paths, handled batch effects seamlessly using Harmony, and annotated cell states that mapped directly to our phenotypes. Unbelievable precision."

Prof. Aris Vance

Genomics R&D Lead, BioPharm Tech

Ready to Analyze Your Data?

Get in touch with our computational team. We will review your project parameters and respond with a formal quote within 24 hours.

Request a Free Consultation